These egg and cottage cheese muffins are the kind of breakfast you’ll look forward to on busy mornings. They’re simple to make, easy to customize, and packed with protein to keep you full. You can prep a batch on Sunday, stash them in the fridge or freezer, and reheat all week.
No fussing with pans or waiting for oatmeal—just grab, warm, and go. If you’re juggling work, school drop-offs, or a tight gym schedule, these muffins make mornings smoother.You’ll find more ideas in our 6 High-Protein Breakfasts That Make Mornings So Much Easier.

Egg & Cottage Cheese Muffins for Make-Ahead Breakfasts - Simple, Protein-Packed, and Portable
Ingredients
Method
- Preheat and prep: Heat your oven to 350°F (175°C). Grease a 12-cup muffin tin well with cooking spray or oil. Line with silicone liners if you have them to prevent sticking.
- Cook moisture-heavy veggies: If using mushrooms, spinach, or onions, sauté them in a little oil for 3–5 minutes to release excess moisture. This keeps the muffins from turning watery.
- Blend the base: In a blender or large bowl, combine eggs, cottage cheese, salt, pepper, and spices. Blend or whisk until mostly smooth. A blender gives a fluffier texture and hides the curds.
- Stir in mix-ins: Fold in shredded cheese, cooked veggies, and any optional protein. Distribute evenly so every muffin gets a good mix.
- Fill the cups: Pour the mixture into the muffin tin, filling each cup about 3/4 full. Stir between pours to keep ingredients from settling.
- Bake: Bake for 18–22 minutes, until the centers are set and the tops are lightly golden. A toothpick should come out clean.
- Cool: Let the muffins cool in the pan for 5 minutes, then run a thin knife around the edges and transfer to a rack. Cooling helps them firm up and release more easily.
- Store or serve: Enjoy warm, or cool completely for storage. Add a sprinkle of fresh herbs or hot sauce if desired.
Why This Recipe Works
- High protein, low effort: Eggs and cottage cheese team up for a satisfying, protein-rich breakfast without complicated prep.
- Moist and fluffy: Cottage cheese adds moisture and a slight creaminess, so the muffins don’t dry out like plain baked eggs.For a skillet version, try our High-Protein Cottage Cheese Frittata.
- Make-ahead friendly: They reheat well and freeze beautifully, keeping texture and flavor intact.Our High-Protein Cottage Cheese Egg Bites are another great freezer-friendly option.
- Customizable: Mix in veggies, herbs, or meats to fit your taste or what’s in your fridge.
- Portion control built-in: Baking in a muffin tin keeps servings consistent and portable.
Ingredients
- 8 large eggs
- 1 cup cottage cheese (2% or 4% works best for moisture)
- 1/2 cup shredded cheese (cheddar, mozzarella, or Swiss)
- 1 cup chopped vegetables (spinach, bell peppers, onions, mushrooms, or broccoli)
- 1/2 teaspoon kosher salt (adjust to taste)
- 1/4 teaspoon black pepper
- 1/2 teaspoon garlic powder (optional)
- 1/2 teaspoon onion powder (optional)
- 1/2 teaspoon smoked paprika (optional, for flavor and color)
- 1/2 cup cooked protein (optional: diced ham, cooked sausage, turkey bacon, or crumbled feta)
- Olive oil or cooking spray for the muffin tin
Instructions
- Preheat and prep: Heat your oven to 350°F (175°C). Grease a 12-cup muffin tin well with cooking spray or oil.Line with silicone liners if you have them to prevent sticking.
- Cook moisture-heavy veggies: If using mushrooms, spinach, or onions, sauté them in a little oil for 3–5 minutes to release excess moisture. This keeps the muffins from turning watery.
- Blend the base: In a blender or large bowl, combine eggs, cottage cheese, salt, pepper, and spices. Blend or whisk until mostly smooth, similar to how we use blended cottage cheese in many of our breakfast recipes..A blender gives a fluffier texture and hides the curds.
- Stir in mix-ins: Fold in shredded cheese, cooked veggies, and any optional protein. Distribute evenly so every muffin gets a good mix.
- Fill the cups: Pour the mixture into the muffin tin, filling each cup about 3/4 full. Stir between pours to keep ingredients from settling.
- Bake: Bake for 18–22 minutes, until the centers are set and the tops are lightly golden.A toothpick should come out clean.
- Cool: Let the muffins cool in the pan for 5 minutes, then run a thin knife around the edges and transfer to a rack. Cooling helps them firm up and release more easily.
- Store or serve: Enjoy warm, or cool completely for storage. Add a sprinkle of fresh herbs or hot sauce if desired.
Keeping It Fresh
- Refrigerate: Store in an airtight container for up to 4 days.Add a paper towel to the container to absorb moisture.
- Freeze: Wrap each muffin in plastic wrap or foil, then place in a freezer bag. Freeze for up to 2 months. Label with the date.
- Reheat: Microwave from the fridge for 25–35 seconds, or from frozen for 60–80 seconds.If you prefer a baked slice instead of muffins, try our Blueberry Cottage Cheese Breakfast Bake.For best texture, reheat in a 325°F (165°C) oven for 8–10 minutes.
- Avoid sogginess: Let freshly baked muffins cool fully before sealing. Steam trapped in the container makes them wet.
Health Benefits
- Protein for satiety: Eggs and cottage cheese provide complete proteins that help keep you full and steady your energy.
- Balanced nutrition: Add veggies for fiber, vitamins, and antioxidants. Choose lean proteins to keep things heart-friendly.
- Low-carb option: Great for low-carb or higher-protein eating patterns without feeling restrictive.
- Calcium and B vitamins: Cottage cheese contributes calcium; eggs offer choline, B12, and other key nutrients.
What Not to Do
- Don’t skip greasing the pan: These muffins can stick.Use spray, oil, or silicone liners.
- Don’t overload with watery veggies: Raw mushrooms or spinach release water and make soggy muffins. Sauté and drain first.
- Don’t overbake: They’ll turn rubbery. Pull them when just set in the center.
- Don’t add too much salt: Cottage cheese and cheeses vary in sodium.Taste your mix-ins and adjust the seasoning.
- Don’t store while hot: Trapped steam ruins texture. Cool before refrigerating or freezing.
Recipe Variations
- Greek-Inspired: Use feta, chopped spinach, red onion, and sun-dried tomatoes. Add oregano and a pinch of chili flakes.
- Southwest: Cheddar, black beans (well-drained), corn, bell pepper, and jalapeño.Finish with cumin and smoked paprika.
- Veggie-Loaded: Zucchini (squeezed dry), mushrooms, spinach, and scallions. A touch of goat cheese adds tang.
- Meat Lover’s: Turkey sausage, diced ham, and cheddar. Keep an eye on salt since the meats are seasoned.
- Herb and Swiss: Swiss cheese with parsley, dill, and chives.Light and fresh, great with a side of fruit.
- Dairy-Light: Use lactose-free cottage cheese and reduce shredded cheese to 1/4 cup. Still creamy, still satisfying.
- Muffin Tin Sizes: For mini muffins, bake 10–12 minutes; for jumbo, bake 22–26 minutes. Watch for set centers.
FAQ
Can I make these without a blender?
Yes.
Whisk the eggs well until frothy, then stir in cottage cheese and seasonings. The texture will be slightly curdier but still tender.
What kind of cottage cheese works best?
Use 2% or 4% cottage cheese for moisture and richness. Nonfat can work, but the muffins may be drier and less fluffy.
How do I prevent sticking?
Grease the pan generously, use silicone liners, or invest in a silicone muffin tray.
Let muffins cool a few minutes before removing.
Can I use egg whites instead of whole eggs?
You can replace some or all yolks with egg whites. For best texture, keep at least 2 whole eggs and use whites for the rest.
Why are my muffins watery?
Excess moisture from veggies is the usual culprit. Sauté moisture-heavy vegetables and drain them before adding to the batter.
How many muffins is a serving?
For most adults, 2 muffins make a solid breakfast, especially with fruit or toast on the side.
Adjust based on your needs.
Can I add potatoes or cooked grains?
Yes. Stir in small amounts of cooked diced potatoes, quinoa, or brown rice. Keep add-ins to about 1 cup total so they set properly.
What’s the best way to reheat without a microwave?
Warm in a 325°F (165°C) oven or toaster oven for 8–10 minutes from the fridge, or 12–15 minutes from frozen.
Do these taste like cottage cheese?
Not really.
Blending softens the curds, and the flavor melts into the eggs and cheese. Most people won’t notice it’s there.
Can I make them spicy?
Absolutely. Add diced jalapeño, chili flakes, or a little hot sauce to the batter.
Serve with salsa for extra heat.
Final Thoughts
Egg and cottage cheese muffins are the kind of recipe that quietly makes life easier. They’re quick to prep, endlessly flexible, and perfect for mornings when time is tight. With a few smart steps—like pre-cooking veggies and not overbaking—you’ll get tender, flavorful muffins every time.
Make a batch, stash them away, and enjoy a calm, satisfying start to your day.
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